usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 51.0265384615384 -26.4357307692308 27.2738076923077 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1924 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 965 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 965 Number of spheres polar: 301, nonpolar: 557, out of current total: 965 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 41.03296 60.96859 -36.43526 -16.47174 17.35372 37.26292 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 286 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 219 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 159 Spheres center of coords (x y z): 49.7439656603774 -25.5348048427673 27.6777963522013 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.48883567787751 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 26