usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 51.0265384615384 -26.4357307692308 27.2738076923077 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1924 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 965 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 965 Number of spheres polar: 301, nonpolar: 557, out of current total: 965 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 41.03296 60.96859 -36.43526 -16.47174 17.35372 37.26292 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 483 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 388 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 289 Spheres center of coords (x y z): 49.7900855017301 -25.5641947404844 27.2494779238754 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.22984587023113 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 46 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 26