usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): 1.7758 -36.63795 21.66345
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1533
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 756
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 756
Number of spheres polar: 293, nonpolar: 397, out of current total: 756
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.21377 11.75571 -46.63347 -26.68353 11.67358 31.65311
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 383
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 303
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 203
Spheres center of coords (x y z): 4.82100733990148 -38.2037811330049 18.4897723152709
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.25147466696276
Final number of output spheres is: 60
Number of polar spheres: 9
Number of nonpolar spheres: 48
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 20