usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 141.374274090909 -24.4969090909091 70.7599545454545 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2023 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 992 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 992 Number of spheres polar: 351, nonpolar: 508, out of current total: 992 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 131.37645 151.31825 -34.33242 -14.50019 60.79699 80.75283 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 481 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 401 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 349 Spheres center of coords (x y z): 140.429481891118 -22.8614936103152 67.062705530086 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.70988096566921 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 22