usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): -0.902 -35.0844 24.26805 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1707 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 795 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 795 Number of spheres polar: 264, nonpolar: 457, out of current total: 795 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.87098 9.04744 -45.03364 -25.10833 14.27613 34.23706 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 243 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 192 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 141 Spheres center of coords (x y z): 1.1194129787234 -36.6032445390071 23.8115243262411 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.00547814841381 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 20