usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 10.0572380952381 13.9884285714286 16.6214285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1471 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 783 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 783 Number of spheres polar: 179, nonpolar: 494, out of current total: 783 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.06199 20.04222 3.99611 23.94940 6.67592 26.60028 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 413 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 330 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 190 Spheres center of coords (x y z): 12.9669505263158 16.6814542105263 14.1438818421053 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.4474903777311 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 45 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 21