usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): 48.33815 63.82205 16.77955
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1747
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 844
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 844
Number of spheres polar: 296, nonpolar: 455, out of current total: 844
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 38.36130 58.33693 53.83220 73.82035 6.79747 26.76296
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 426
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 345
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 230
Spheres center of coords (x y z): 46.2904597391305 60.9768112608696 13.6832788695652
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.26403461675522
Final number of output spheres is: 60
Number of polar spheres: 11
Number of nonpolar spheres: 47
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 20