usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 50.1345357142857 -27.8883928571429 36.7753571428572 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2051 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1111 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1111 Number of spheres polar: 286, nonpolar: 704, out of current total: 1111 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 40.13938 60.08255 -37.87861 -17.89782 26.78465 46.70617 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 566 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 485 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 441 Spheres center of coords (x y z): 51.8092558956916 -25.2823711564626 37.6761728344671 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.35296531449048 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 28