usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 8.29221212121212 10.9504242424242 16.5118484848485 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1818 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 779 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 778 Number of spheres polar: 194, nonpolar: 492, out of current total: 778 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.39419 18.17206 0.95182 20.94876 6.54606 26.49325 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 240 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 201 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 175 Spheres center of coords (x y z): 6.59778777142857 8.45734702857142 14.4533614285714 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.15059646283579 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 33