usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): -3.68177777777778 -34.4926111111111 24.5436944444444 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2002 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 888 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 888 Number of spheres polar: 287, nonpolar: 499, out of current total: 888 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.67660 6.30688 -44.48735 -24.79372 14.59843 34.50297 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 268 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 216 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 179 Spheres center of coords (x y z): -6.92062463687151 -35.778338547486 25.8867269273743 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.6314368709775 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 36