usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): -3.76419444444444 -34.4574722222222 24.3172777777778 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2141 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1013 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1013 Number of spheres polar: 299, nonpolar: 611, out of current total: 1013 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.76027 6.22719 -44.39984 -24.46726 14.32063 34.26221 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 294 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 237 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 219 Spheres center of coords (x y z): -5.16927219178082 -36.8068756621004 24.0685828310502 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.28039586087545 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 36