usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): -5.92771052631579 -35.7003157894737 24.447 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1774 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 887 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 887 Number of spheres polar: 223, nonpolar: 549, out of current total: 887 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -15.87984 4.04605 -45.67809 -25.78904 14.46995 34.43587 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 284 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 238 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 198 Spheres center of coords (x y z): -8.06085949494949 -37.0179724242424 25.9802441414141 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.33470301518694 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 38