usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 8.48882142857143 11.3788214285714 16.4123928571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1423 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 786 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 786 Number of spheres polar: 258, nonpolar: 447, out of current total: 786 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.50599 18.45393 1.38389 21.26076 6.41727 26.40200 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 237 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 198 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 156 Spheres center of coords (x y z): 9.56497641025641 11.2117212820513 14.0997571794872 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.82410653082208 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 28