usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 50.4935185185185 65.0968518518519 16.9995555555556 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1893 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 864 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 862 Number of spheres polar: 290, nonpolar: 492, out of current total: 862 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 40.58100 60.46563 55.11334 75.05730 7.00124 26.99393 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 423 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 357 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 301 Spheres center of coords (x y z): 49.9507767441861 66.0427145847176 15.4402476744186 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.85279435575809 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 42 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 27