usefragsph not on There are 13 ligand heavy atoms Ligand center of coords (x y z): 11.8133076923077 20.8551538461538 14.0341538461538 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 646 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 513 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 507 Number of spheres polar: 226, nonpolar: 130, out of current total: 507 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.81416 21.65457 11.03606 29.99799 4.21025 23.94131 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 295 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 263 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 254 Spheres center of coords (x y z): 10.6162561023622 19.9745933858268 15.2642634251969 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.45029150910067 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 11 Number of spheres that are near neither polar nor nonpolar receptor atoms: 23 Final number of spheres that are from crystallographic ligand: 13