usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 67.9944814814815 58.5007777777778 -64.7404074074074 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1518 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 895 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 891 Number of spheres polar: 259, nonpolar: 418, out of current total: 891 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 58.10425 77.99276 48.67086 68.07597 -74.59800 -54.77937 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 446 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 386 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 371 Spheres center of coords (x y z): 70.8987573854448 58.8690590566037 -63.6783184366577 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.69869154409352 Final number of output spheres is: 60 Number of polar spheres: 34 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 27