usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 9.558 12.4854583333333 17.5605 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1955 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 894 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 894 Number of spheres polar: 338, nonpolar: 478, out of current total: 894 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.37925 19.49301 2.48593 22.46443 7.56398 27.53072 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 246 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 192 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 159 Spheres center of coords (x y z): 9.48041679245283 10.8423891823899 16.8480450943396 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.54645203313282 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 24