usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): -1.81405555555556 73.6180555555556 33.4303888888889 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 816 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 594 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 564 Number of spheres polar: 232, nonpolar: 166, out of current total: 564 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.08500 8.13829 63.67574 83.56372 23.43959 43.42209 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 213 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 178 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 166 Spheres center of coords (x y z): 0.521430180722892 72.4419011445783 32.7732028915663 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.29445091991767 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 11 Number of spheres that are near neither polar nor nonpolar receptor atoms: 19 Final number of spheres that are from crystallographic ligand: 18