usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 49.7248571428571 64.0665 17.0761428571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1945 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 879 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 879 Number of spheres polar: 289, nonpolar: 497, out of current total: 879 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 39.74653 59.71984 54.06689 74.02773 7.09078 27.06070 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 276 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 222 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 176 Spheres center of coords (x y z): 47.3586797727273 62.6029865909091 14.5053192613636 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.13043124805817 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 28