usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 9.5755 12.6225714285714 16.9775357142857
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1849
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 924
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 924
Number of spheres polar: 243, nonpolar: 592, out of current total: 924
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.36550 19.56760 2.63700 22.61278 6.98242 26.95972
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 470
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 399
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 298
Spheres center of coords (x y z): 11.1655903691275 13.4122516442953 16.4464172818792
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.91541373703251
Final number of output spheres is: 60
Number of polar spheres: 17
Number of nonpolar spheres: 40
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 28