usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 9.85825 12.6038928571429 16.8192142857143
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2051
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 977
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 977
Number of spheres polar: 287, nonpolar: 579, out of current total: 977
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.11153 19.85511 2.61747 22.60184 6.85063 26.80834
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 488
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 413
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 327
Spheres center of coords (x y z): 11.5414037003058 13.509015351682 15.5134971253823
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.31554317628956
Final number of output spheres is: 60
Number of polar spheres: 20
Number of nonpolar spheres: 38
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 28