usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 10.3725714285714 13.4361071428571 16.9397857142857
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1917
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 976
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 976
Number of spheres polar: 273, nonpolar: 581, out of current total: 976
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.38745 20.31719 3.45854 23.39530 6.94149 26.91250
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 276
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 224
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 161
Spheres center of coords (x y z): 11.9884929813665 14.1344808695652 15.8474786335404
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.1202494071852
Final number of output spheres is: 45
Number of polar spheres: 11
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 28