usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): -0.442925925925926 73.5404074074074 33.7933703703704 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 822 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 594 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 565 Number of spheres polar: 210, nonpolar: 177, out of current total: 565 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.33462 8.07213 63.54890 83.52740 23.82765 43.79075 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 339 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 302 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 260 Spheres center of coords (x y z): 0.161925846153847 71.6589030384616 33.4543950769231 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.66997436983586 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 26 Final number of spheres that are from crystallographic ligand: 27