usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 9.52723076923077 12.4058846153846 17.4328076923077 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1822 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 896 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 896 Number of spheres polar: 232, nonpolar: 602, out of current total: 896 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.45571 19.47535 2.45963 22.39840 7.46173 27.42557 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 263 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 213 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 178 Spheres center of coords (x y z): 9.93466893258427 11.1296526404494 17.2845996067416 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.30155778508545 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 26