Distance from surface specified: 1.80 There are 26 ligand heavy atoms Ligand center of coords (x y z): 9.52723076923077 12.4058846153846 17.4328076923077 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 16314 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 14147 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 14002 Number of spheres polar: 7526, nonpolar: 5284, out of current total: 14002 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.47040 23.51320 -1.58940 26.40360 3.43980 31.43240 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1889 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 950 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 925 Spheres center of coords (x y z): 8.16350508108108 11.5080977297297 18.319897945946 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 12.117849844109 Final number of output spheres is: 200 Number of polar spheres: 105 Number of nonpolar spheres: 89 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 26