usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): 36.0500909090909 5.42663636363636 -1.16954545454545 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1046 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 716 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 716 Number of spheres polar: 315, nonpolar: 285, out of current total: 716 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 26.07195 45.99380 -4.56927 15.40121 -9.59957 8.51765 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 342 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 286 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 257 Spheres center of coords (x y z): 35.1535087937743 0.328339416342412 2.97227361867704 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.93056447883927 Final number of output spheres is: 60 Number of polar spheres: 36 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 11