usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): -20.7061818181818 5.98609090909091 24.9263636363636 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 673 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 311 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 311 Number of spheres polar: 209, nonpolar: 74, out of current total: 311 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -30.31046 -10.71096 -3.69021 15.97672 14.94022 32.96648 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 81 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 60 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 23 Final number of output spheres is: 23 Number of polar spheres: 12 Number of nonpolar spheres: 9 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 11