usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 19.2841034482759 -23.2495172413793 15.1689655172414 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1360 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 926 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 921 Number of spheres polar: 257, nonpolar: 402, out of current total: 921 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.28570 29.27758 -33.24117 -13.51104 5.18608 25.08903 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 333 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 275 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 266 Spheres center of coords (x y z): 19.818572593985 -26.972177368421 14.8624482706767 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.26194179480756 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 29