usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 20.3998 -22.7736 15.8677 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1448 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 966 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 963 Number of spheres polar: 239, nonpolar: 473, out of current total: 963 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.49541 30.38148 -32.77042 -12.84562 5.87073 25.72971 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 331 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 280 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 265 Spheres center of coords (x y z): 20.6542676981132 -26.7689535471698 16.0587203773585 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.45146756633312 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 30