usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 20.3998 -22.7736 15.8677 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1448 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 966 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 963 Number of spheres polar: 239, nonpolar: 473, out of current total: 963 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.49541 30.38148 -32.77042 -12.84562 5.87073 25.72971 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 575 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 477 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 456 Spheres center of coords (x y z): 20.9066716008772 -26.4483151535087 16.0371925219298 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.24520599111556 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 30