usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 17.3568787878788 7.5200303030303 14.9254545454545 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1535 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 967 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 965 Number of spheres polar: 280, nonpolar: 409, out of current total: 965 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.36095 27.34687 -2.35102 17.49488 4.95476 24.92360 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 537 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 463 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 450 Spheres center of coords (x y z): 16.5916117555556 10.9285610444444 14.5402297333333 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.9175211031675 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 33