usefragsph not on
There are 42 ligand heavy atoms
Ligand center of coords (x y z): -5.52795238095238 -15.2439047619048 7.23302380952381
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1575
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1048
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1043
Number of spheres polar: 252, nonpolar: 485, out of current total: 1043
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -15.51800 4.44971 -25.18074 -5.25213 -2.71972 17.07522
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 596
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 514
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 505
Spheres center of coords (x y z): -7.0924687920792 -18.0188869108911 7.88705073267327
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.83098640893451
Final number of output spheres is: 60
Number of polar spheres: 28
Number of nonpolar spheres: 27
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 42