usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 78.0342631578947 9.09278947368421 -4.91860526315789 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1921 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1107 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1105 Number of spheres polar: 256, nonpolar: 531, out of current total: 1105 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 68.07556 88.00945 -0.89467 19.00600 -14.76490 4.03678 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 606 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 535 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 532 Spheres center of coords (x y z): 78.6092111466166 8.3127734774436 -8.28534253759399 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.27359676800322 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 38