usefragsph not on
There are 41 ligand heavy atoms
Ligand center of coords (x y z): 2.83224390243902 5.03112195121951 -12.0412682926829
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1669
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1014
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1014
Number of spheres polar: 253, nonpolar: 413, out of current total: 1014
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.79473 12.80975 -4.94313 15.00543 -21.88751 -3.18279
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 352
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 293
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 288
Spheres center of coords (x y z): 3.65334920138889 6.02160045138888 -15.3046728819444
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.87602231703463
Final number of output spheres is: 45
Number of polar spheres: 11
Number of nonpolar spheres: 22
Number of spheres that are near neither polar nor nonpolar receptor atoms: 12
Final number of spheres that are from crystallographic ligand: 41