usefragsph not on There are 42 ligand heavy atoms Ligand center of coords (x y z): 33.9951428571429 -5.98771428571429 -12.3054761904762 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1713 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1094 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1094 Number of spheres polar: 251, nonpolar: 489, out of current total: 1094 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.03622 43.83486 -15.98729 4.00582 -22.28662 -3.43861 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 616 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 548 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 540 Spheres center of coords (x y z): 32.2165293518519 -6.67753435185185 -15.3610281111111 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.03466815887877 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 42