usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 78.2076315789473 9.10778947368421 -4.88318421052632 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1926 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1090 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1088 Number of spheres polar: 262, nonpolar: 485, out of current total: 1088 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 68.31346 88.17808 -0.79495 19.09800 -14.80432 4.02486 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 613 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 540 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 537 Spheres center of coords (x y z): 78.9003267597765 8.29820644320298 -8.20709841713222 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.21790741766483 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 38