usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): -15.5426756756757 8.00210810810811 45.5540810810811 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1724 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1082 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1082 Number of spheres polar: 307, nonpolar: 452, out of current total: 1082 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -25.50444 -5.56994 -1.81152 17.93530 36.85434 55.37736 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 350 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 276 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 258 Spheres center of coords (x y z): -13.6907677131783 7.48085271317829 48.1951725968992 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.92435901019512 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 37