usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): -15.5426756756757 8.00210810810811 45.5540810810811 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1724 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1082 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1082 Number of spheres polar: 307, nonpolar: 452, out of current total: 1082 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -25.50444 -5.56994 -1.81152 17.93530 36.85434 55.37736 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 578 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 501 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 474 Spheres center of coords (x y z): -13.5835533122363 7.30769099156118 48.1049897046414 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.89641701551183 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 37