usefragsph not on There are 46 ligand heavy atoms Ligand center of coords (x y z): 14.6050652173913 5.31030434782609 46.2170869565217 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1830 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1187 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1186 Number of spheres polar: 329, nonpolar: 523, out of current total: 1186 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.61083 24.54152 -4.68926 15.30771 36.88227 56.14594 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 651 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 569 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 565 Spheres center of coords (x y z): 13.453227699115 6.56290261946902 48.9423888318585 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.62501405428413 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 46