usefragsph not on
There are 27 ligand heavy atoms
Ligand center of coords (x y z): 3.40040740740741 11.1797037037037 24.8570740740741
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1572
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 891
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 891
Number of spheres polar: 215, nonpolar: 513, out of current total: 891
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.07271 13.34361 1.20977 16.94027 14.87860 34.81489
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 466
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 401
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 388
Spheres center of coords (x y z): 4.57907858247422 7.77228103092783 25.2374464948454
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.69014742869701
Final number of output spheres is: 60
Number of polar spheres: 11
Number of nonpolar spheres: 41
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 27