usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 2.58295652173913 10.8940869565217 24.8920434782609 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1430 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 905 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 905 Number of spheres polar: 221, nonpolar: 500, out of current total: 905 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.40737 12.56835 1.01677 16.52761 14.96712 34.71636 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 276 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 238 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 238 Spheres center of coords (x y z): 4.16385605042017 7.23970147058824 24.8755982773109 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.30397258861746 Final number of output spheres is: 45 Number of polar spheres: 6 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 23