usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 3.03676 10.9416 24.67888
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1541
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 930
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 930
Number of spheres polar: 271, nonpolar: 481, out of current total: 930
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.68380 13.02390 0.94328 16.61162 14.75700 34.60343
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 482
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 405
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 404
Spheres center of coords (x y z): 4.4559826980198 7.52734690594059 24.9400706188119
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.21057187190815
Final number of output spheres is: 60
Number of polar spheres: 16
Number of nonpolar spheres: 38
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 25