usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 3.19178571428571 11.4808928571429 24.7581785714286
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1548
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 860
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 860
Number of spheres polar: 218, nonpolar: 453, out of current total: 860
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -5.60401 13.12847 1.49836 16.52062 14.81100 34.74420
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 263
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 218
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 218
Spheres center of coords (x y z): 3.94113077981651 7.8056530733945 24.6786647247706
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.98556826722997
Final number of output spheres is: 45
Number of polar spheres: 9
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 28