usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 2.79669230769231 10.9023461538462 24.8080384615385 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1551 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 938 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 938 Number of spheres polar: 263, nonpolar: 495, out of current total: 938 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.59439 12.72309 0.98299 16.49933 14.84242 34.72041 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 474 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 410 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 410 Spheres center of coords (x y z): 4.42135190243903 7.85749356097562 25.1695228536585 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.98455927556701 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 42 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 26