usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 2.521 11.18268 25.314
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1476
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 892
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 892
Number of spheres polar: 222, nonpolar: 500, out of current total: 892
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -5.37070 12.51174 1.29919 16.60460 15.52651 35.30787
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 294
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 241
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 239
Spheres center of coords (x y z): 3.98983171548117 7.57118736401674 25.3996226359833
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.1262760902264
Final number of output spheres is: 45
Number of polar spheres: 3
Number of nonpolar spheres: 36
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 25