usefragsph not on
There are 27 ligand heavy atoms
Ligand center of coords (x y z): 0.586111111111111 34.3470740740741 -3.66055555555556
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1038
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 708
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 708
Number of spheres polar: 232, nonpolar: 333, out of current total: 708
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.39481 10.36946 24.50833 44.34389 -13.65663 6.33394
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 413
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 355
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 339
Spheres center of coords (x y z): 1.53147008849557 37.8907680530973 -3.10245002949853
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.50672994864533
Final number of output spheres is: 60
Number of polar spheres: 12
Number of nonpolar spheres: 40
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 27