usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 35.55605 33.1486 -3.6114 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1123 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 807 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 807 Number of spheres polar: 236, nonpolar: 399, out of current total: 807 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.57347 45.55329 23.20745 43.12626 -13.26255 6.38327 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 443 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 366 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 358 Spheres center of coords (x y z): 37.7141940502793 37.4239931564246 -3.67182527932961 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.76115472353165 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 40 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 20