There are 40 ligand heavy atoms Ligand center of coords (x y z): 41.20165 -46.5482 65.60335 useligsph not on Starting number of spheres from sph/sph cluster 0: 1268 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 875 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 865 Number of spheres polar: 304, nonpolar: 304, out of current total: 865 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 29.25228 52.55132 -58.45514 -34.56950 53.60783 77.44014 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 346 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 263 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): 41.20165 -46.5482 65.60335 Center point: 153 xyz: 42.34280 -46.45185 65.62406 After continuity checking, number of spheres is: 234 Spheres center of coords (x y z): 42.8312030341881 -46.011893974359 67.0133641025641 Not crystallographic ligand, so keeping spheres closest to center of receptor, center of ligand, and center of spheres Receptor center of coords (x y z): 33.3949995039683 -47.9833214285715 62.6586111111112 Average weighted-distance for final elimination is: 28.5289405730037 Final number of output spheres is: 120 Number of polar spheres: 43 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 40 Final number of spheres that are from crystallographic ligand: 0