usefragsph not on
There are 40 ligand heavy atoms
Ligand center of coords (x y z): 41.20165 -46.5482 65.60335
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1268
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 783
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 780
Number of spheres polar: 245, nonpolar: 296, out of current total: 780
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 31.47898 51.17189 -56.25269 -36.58506 56.30423 75.57900
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 447
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 385
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 368
Spheres center of coords (x y z): 42.2409508967392 -46.1341007608695 66.5026733152174
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.08320237869925
Final number of output spheres is: 60
Number of polar spheres: 17
Number of nonpolar spheres: 26
Number of spheres that are near neither polar nor nonpolar receptor atoms: 17
Final number of spheres that are from crystallographic ligand: 40