usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 32.0697777777778 8.75214814814815 25.2297037037037 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1205 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 650 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 649 Number of spheres polar: 221, nonpolar: 295, out of current total: 649 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.00952 41.98905 -1.22590 15.59054 15.30473 35.18076 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 379 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 332 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 325 Spheres center of coords (x y z): 34.0219086461538 5.53340384615384 24.8357446461539 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.43293686603892 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 27